Q3
LONG ANSWER
10M
★ High-yield
Define high-energy compounds. Classify them with examples and explain the central role of ATP.
Bioenergetics and Free Energy
Bioenergetics = the study of energy transformations in living systems.
| Term | Meaning |
|---|---|
| ΔG (free energy change) | The energy available to do useful work |
| Exergonic | ΔG negative — energy released; spontaneous |
| Endergonic | ΔG positive — energy required; not spontaneous |
| ΔG = 0 | The reaction is at equilibrium |
| ΔG°′ | Standard free energy change at pH 7.0, 25 °C, 1 M |
- ΔG depends on the actual concentrations, not only on ΔG°′ — which is why reactions with a positive ΔG°′ still proceed in the cell when the product is removed
- Endergonic reactions are driven by coupling to an exergonic one, usually ATP hydrolysis, through a shared intermediate
Definition of a High-energy Compound
High-energy compounds = compounds whose hydrolysis releases a large amount of free energy, conventionally ΔG°′ more negative than −7 kcal/mol (−30 kJ/mol).
- The bond is written ~ (a squiggle), though it is not a special kind of chemical bond — the energy comes from the greater stability of the products, through resonance and relief of charge repulsion
Classification with Values
| Compound | ΔG°′ (kcal/mol) | Type |
|---|---|---|
| Phosphoenolpyruvate | −14.8 | Enol phosphate — the highest |
| Carbamoyl phosphate | −12.3 | Acyl phosphate |
| 1,3-Bisphosphoglycerate | −11.8 | Acyl phosphate |
| Creatine phosphate | −10.3 | Phosphagen (guanidino phosphate) |
| Acetyl-CoA | −7.5 | Thioester |
| ATP → ADP + Pi | −7.3 | Pyrophosphate |
| Glucose-1-phosphate | −5.0 | Low energy |
| Glucose-6-phosphate | −3.3 | Low energy |
| Glycerol-3-phosphate | −2.2 | Low energy — the lowest |
CLINICAL PEARL
ATP sits deliberately in the middle of the range. That is the whole point. It can be formed by compounds above it and can donate phosphate to those below it — making it a universal intermediate rather than a dead end. A molecule at either extreme could not serve as currency.
ATP — the Energy Currency
- Structure — adenine + ribose + three phosphates; the β and γ phosphates carry high-energy bonds
- Turnover is enormous — a resting adult makes and uses about 40–70 kg of ATP a day, while the body contains only about 50 g at any moment
- Total cellular concentration is only 2–5 mM; it is a transmitter of energy, not a store
- ATP → amp + PPi releases about 10 kcal, since the pyrophosphate is then hydrolysed — used to drive reactions that must not reverse, such as fatty acid activation and aminoacyl-tRNA formation
Uses of ATP
- Chemical work — biosynthesis
- Mechanical work — muscle contraction, cilia, chromosome movement
- Transport work — Na+/K+-ATPase and other pumps
- Electrical work — maintaining membrane potential
- Heat production
- Precursor of cAMP, and a component of NAD, FAD and coenzyme A
Creatine Phosphate — the Immediate Buffer
Rest: ATP + creatine → creatine phosphate + ADP → Exercise: creatine phosphate + ADP → ATP + creatine → Enzyme: creatine kinase, freely reversible
- Present at 4–5 times the concentration of ATP in muscle
- Supplies energy for the first 5–8 seconds of maximal effort, before glycolysis takes over
- Because it is higher on the scale than ATP, it can regenerate ATP directly — a phosphagen
Sources of High-energy Phosphate
| Source | Mechanism | Contribution |
|---|---|---|
| Oxidative phosphorylation | Proton gradient | About 90% |
| Glycolysis | Substrate-level (2 steps) | Small but oxygen-independent |
| TCA cycle | Substrate-level (succinate thiokinase → GTP) | 1 per turn |
| Creatine phosphate | Creatine kinase | Immediate buffer |
| Adenylate kinase | 2 ADP ↔ ATP + amp | Salvages energy; generates the amp that signals depletion |
Applied Aspects
- Cyanide, carbon monoxide and any block of the respiratory chain stop ATP production, and death follows within minutes — the brain has almost no reserve
- Rigor mortis occurs because ATP is required to release the actin–myosin cross-bridge; without it the muscle stays contracted
- Creatine supplements raise the muscle phosphocreatine pool and improve performance in short bursts of high-intensity exercise
- Creatine kinase measurement — CK-MB in myocardial infarction, CK-MM in muscular dystrophy and rhabdomyolysis
- Ischaemia depletes ATP within seconds, and the amp formed is degraded to urate — which is why serum urate rises after a myocardial infarction or seizure
- The Na+/K+-ATPase alone consumes 20–30% of resting ATP, and far more in the kidney and brain
- Hypothermia during cardiac surgery lowers ATP demand and protects the brain — the practical use of the temperature dependence of metabolism
All questions in Bioenergetics & Biological Oxidation
- Q1Describe the components and organisation of the electron transport chain. Add a note on its inhibitors. ★
- Q2Describe oxidative phosphorylation. Explain the chemiosmotic theory and the structure and working of ATP synthase. ★
- Q3Define high-energy compounds. Classify them with examples and explain the central role of ATP. ★
- Q4Define free radicals. Describe the reactive oxygen species, the mechanisms of tissue damage, and the antioxidant defences of the body. ★
- Q5Classify the enzymes of biological oxidation. Describe the cytochrome P450 system and the phases of drug biotransformation. ★
- SN1Define uncouplers. Describe their mechanism, effects and examples. Differentiate them from inhibitors. ★
- SN2Describe the shuttle systems for transporting cytosolic NADH into the mitochondrion. ★
- SN3Describe brown adipose tissue and the mechanism of non-shivering thermogenesis.
- SN4Describe superoxide dismutase and the enzymatic antioxidant defences of the body. ★
- SN5Define redox potential. Describe its significance in the electron transport chain.
- SN6Classify the cytochromes and describe their role in biological oxidation. ★
- SN7Describe the phases of biotransformation of xenobiotics with examples. ★