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Q4 LONG ANSWER 10M ★ High-yield

Define free radicals. Describe the reactive oxygen species, the mechanisms of tissue damage, and the antioxidant defences of the body.

Biochemistry · 1st Professional — Pre-Clinical

Definition

Free radical = any atom or molecule containing one or more unpaired electrons in its outer orbital, making it highly reactive and short-lived.

  • They react by stealing an electron from a neighbouring molecule, which itself becomes a radical — a self-propagating chain reaction

Reactive Oxygen Species

SpeciesFormulaOriginReactivity
Superoxide anionO2•−Leak from complexes I and III; NADPH oxidase; xanthine oxidaseModerate
Hydrogen peroxideH2O2From superoxide, by SODNot a radical, but crosses membranes freely and is the precursor of the worst one
Hydroxyl radicalOH•Fenton and Haber–Weiss reactionsThe most damaging — reacts with almost anything it meets
Singlet oxygen1O2PhotosensitisationHigh
PeroxynitriteONOO−Superoxide + nitric oxideVery high
Hypochlorous acidHOClMyeloperoxidase in neutrophilsHigh — bactericidal

The Fenton reaction

Fe2+ + H2O2 → Fe3+ + OH• + OH−

  • This is why free iron and copper are dangerous, and why the body binds them so carefully to transferrin, ferritin and caeruloplasmin

Sources

EndogenousExogenous
Respiratory chain leak — 1–3% of oxygen usedIonising and ultraviolet radiation
NADPH oxidase — the respiratory burst of phagocytesCigarette smoke, air pollution
Xanthine oxidase — especially on reperfusionDrugs — paracetamol, doxorubicin, bleomycin, paraquat
Cytochrome P450Heavy metals, pesticides
Peroxisomal oxidases; autoxidation of haemoglobinHyperoxia — oxygen therapy

Mechanisms of Damage

TargetDamageMarker
LipidsLipid peroxidation of membrane polyunsaturated fatty acids → loss of fluidity and integrityMalondialdehyde (MDA); 4-hydroxynonenal
ProteinsOxidation of –SH groups, fragmentation, cross-linking → loss of enzyme activityProtein carbonyls
DNABase modification, strand breaks → mutation and carcinogenesis8-hydroxydeoxyguanosine
CarbohydratesDepolymerisation of hyaluronic acidLoss of joint lubrication
  • Lipid peroxidation is a chain reaction — one radical can destroy many fatty acid molecules until an antioxidant terminates it

Antioxidant Defences

A. Enzymatic

EnzymeReactionCofactor
Superoxide dismutase (SOD)2 O2•− → H2O2 + O2Cu and Zn (cytosol); Mn (mitochondria)
Catalase2 H2O2 → 2 H2O + O2Haem; in peroxisomes
Glutathione peroxidaseH2O2 + 2 GSH → 2 H2O + GSSGSelenium
Glutathione reductaseGSSG → 2 GSHNADPH from the HMP shunt

B. Non-enzymatic

  • Vitamin E — the chief lipid-phase antioxidant; breaks the lipid peroxidation chain
  • Vitamin C — the chief aqueous-phase antioxidant; regenerates vitamin E
  • Glutathione — the most abundant intracellular thiol
  • β-Carotene — quenches singlet oxygen
  • Uric acid — a major plasma antioxidant, which is one argument for not lowering it excessively
  • Bilirubin — an effective antioxidant, possibly explaining a benefit of mild unconjugated hyperbilirubinaemia
  • Trace elements — selenium, zinc, copper, manganese as enzyme cofactors
  • Metal-binding proteins — transferrin, ferritin, caeruloplasmin, albumin; they prevent the Fenton reaction

Free Radicals in Disease

ConditionRole of free radicals
AtherosclerosisOxidation of LDL → foam cell formation — the key step
CancerDNA damage and mutation
AgeingCumulative oxidative damage — the free radical theory
Reperfusion injuryXanthine oxidase burst when oxygen returns to ischaemic tissue
NeurodegenerationParkinson and Alzheimer disease; SOD1 mutation causes familial ALS
Retinopathy of prematurity, bronchopulmonary dysplasiaOxygen therapy in an infant with immature defences
Rheumatoid arthritisNeutrophil-derived radicals in the joint
CataractLens protein oxidation and cross-linking
Paracetamol and CCl4 toxicityReactive metabolites deplete glutathione

Applied Aspects

  • N-acetylcysteine replenishes glutathione — the antidote in paracetamol poisoning; the clearest therapeutic success of antioxidant reasoning
  • Large trials of antioxidant vitamin supplements have been disappointing, and β-carotene increased lung cancer in smokers. A convincing mechanism does not guarantee that supplementation helps
  • Dietary antioxidants from whole foods behave differently from isolated supplements — the practical advice remains fruit and vegetables, not pills
  • Free radicals are not simply harmful — the respiratory burst kills bacteria, and nitric oxide is a signalling molecule. Its absence causes chronic granulomatous disease

All questions in Bioenergetics & Biological Oxidation

  1. Q1Describe the components and organisation of the electron transport chain. Add a note on its inhibitors. ★
  2. Q2Describe oxidative phosphorylation. Explain the chemiosmotic theory and the structure and working of ATP synthase. ★
  3. Q3Define high-energy compounds. Classify them with examples and explain the central role of ATP. ★
  4. Q4Define free radicals. Describe the reactive oxygen species, the mechanisms of tissue damage, and the antioxidant defences of the body. ★
  5. Q5Classify the enzymes of biological oxidation. Describe the cytochrome P450 system and the phases of drug biotransformation. ★
  6. SN1Define uncouplers. Describe their mechanism, effects and examples. Differentiate them from inhibitors. ★
  7. SN2Describe the shuttle systems for transporting cytosolic NADH into the mitochondrion. ★
  8. SN3Describe brown adipose tissue and the mechanism of non-shivering thermogenesis.
  9. SN4Describe superoxide dismutase and the enzymatic antioxidant defences of the body. ★
  10. SN5Define redox potential. Describe its significance in the electron transport chain.
  11. SN6Classify the cytochromes and describe their role in biological oxidation. ★
  12. SN7Describe the phases of biotransformation of xenobiotics with examples. ★

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